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Assessment of genetic diversity of Canthium parviflorum Lam by RAPD and ISSR markers

Kokkanti Mallikarjuna, Chandra Kala Sirigiri, Ratnakar Reddi K.V.N., Chandra Sekhar Akila, Obul Reddy Puli Chandra

Abstract


Canthium parviflorum Lam is an important medicinal plant widely used in traditional systems of medicine with propagation limitations. In the present work, we are reporting the genetic diversity analysis of naturally occurring and in vitro grown plants by RAPD and ISSR markers. The plants developed on MS medium supplemented with BA (2mg/l) and NAA (0.5mg/l) using nodal and leaf explants were used along with plants present in five different geographical areas. Genetic diversity analysis using DNA based markers, RAPD and ISSR indicated that considerable genetic variations are present in naturally occurring plants. It is also indicated that tissue culture plants and their wild relatives show genetic similarity by grouping into one clad. The amplification products of the regenerated plants showed similar banding patterns to that of the mother plant thus demonstrating the homogeneity of the micropropagated plants. The variations observed in naturally occurring plants could be due to the impact of local environmental factors and accumulation of mutations in the course of evolution. This is the first report on genetic diversity of Canthium plant populations.


Keywords


Canthium parviflorum, natural plant populations, tissue culture plants, genetic diversity, RAPD, ISSR.

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References


Afzal MA, Haque MM and Shanmugasundaram, S."Random Amplified Polymorphic DNA (RAPD) analysis of selected mungbean (Vigna radiaia L. Wilczek) cultivars”. Asian J. Plant Sci. 3, (2004): 20-24.

Andrew, Clark and Caroline M Lanigan. “Prospects for Estimating Nucleotide Divergence with RAPDs.” Molecular Biology and Evolution 10, 5 (1993): 1096-1111.

Ayyanar M, Sankarasivaraman K and Ignacimuthu S. “Traditional Herbal Medicines used for the treatment of Diabetes among two major tribal groups in south Tamil Nadu, India.” Ethnobotanical Leaflets 12 (2008): 276-280.

Ba FS, RS Pasquet and PM Gepts. “Genetic diversity in cowpea [Vigna aunguiculata (L.) Walp] revealed by RAPD markers.” Genetic Resources and Crop Evol. 51(2004): 539-550.

Chen WH, Chen, TM, Fu YM, Hsieh RM, Chen WS. “Studies on somaclonal variation in Phalaenopsis.” Plant Cell Rep. 18 (1998): 7–13.

Devi SP, Kumaria S, Rao SR, Tandon P. “In vitro propagation and assessment of clonal fidelity of Nepenthes khasiana Hook. f.: a medicinal insectivorous plant of India.” Acta Physiol. Plant. 35 (2013): 2813–2820.

Ferreira WDM, Kerbauy, GB, Costa APP. “Micropropagation and genetic stability of a Dendrobium hybrid (Orchidaceae).” In vitro Cell Dev. Biol. Plant, 42 (2006): 568–571.

Goto S, Thakur RC, Ishii K. “Determination of genetic stability in long-term micropropagated shoots of Pinus thumbergii Parl. using RAPD markers.” Plant Cell Rep. 18 (1998):193–197.

Hosagoudar VB & GR Archana. “Host range of meliolaceous fungi in India.” Journal of Threatened Taxa, 1 (2009): 269-282.

Khoddamzadeh AA. “Detection of somaclonal variation by random amplified polymorphic DNA analysis during micropropagation of Phalaenopsis bellina (Rchb. f.) Christenson.” African J. Biotechnol. 9 (2010): 6632–6639.

Kirtikar KR, and Basu BD. Lalit Mohan Basu, Allahabad, India, Indian Medicinal Plants.1 (2001): 35-45.

Li F, Gan S, Weng Q, Zhao X, Huang S, Li M, Chen S, Wang Q, Shi F. “RAPD and morphological diversity among four populations of the tropical tree species Paramichelia baillonii (Pierre) Hu in China.” Forest Ecology and Management. 255 (2008):1793-1801.

Lopes PM, Brito JM, Gomes S, Meirinhos J, Santos L, Pinto HG. “RAPD and ISSR molecular markers in Oleaeuropaea L.: Genetic variability and molecular cultivar identification.” Genetic Resources and Crop Evolution. 54 (2007): 117- 128.

Manoj Kumar Mishra, Sandhyarani Nishani and Jayarama. “Molecular identification and genetic relationships among Coffee Species (Coffea L.) inferred from ISSR and RAPD Marker Analyses.” Arch. Biol. Sci., Belgrade, 63 (2011): 667-679.

Murashige T and Skoog F. “A revised medium for rapid growth and bioassays with tobacco tissue cultures.” Plant Physiol. 150 (1962): 473-497.

Murray MG, and Thompson WF. “Rapid isolation of high molecular weight plant DNA. Nuclei. Acids” Res. 8 (1980): 4321-5.

Nei M, and W H Li “Mathematical model for studying genetic variation in terms of restriction endonucleases.” Proc Natl Acad Sci U S A. 76 (1979): 5269–5273.

Paromik Bhattacharyya, SumanKumaria, ReemavareenDiengdoh, PramodTandon. “Genetic stability and phytochemical analysis of the in vitro regenerated plants of Dendrobium nobile Lindl., an endangered medicinal orchid.” Meta Gene 2 (2014): 489–504.

Pradeep Reddy M, Sarla N, & EA Siddiq. “Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding.” Euphytica 128(2002): 9–17.

Roy AR, Sajeev S, Pattanayak A, Deka BC. “TDZ induced micropropagation in Cymbidium giganteum Wall. Ex Lindl. And assessment of genetic variation in the regenerated plants.” Plant Growth Regul. 68 (2012): 435–445.

Sandeep K, Yadav, Sumita Kachhawaha and SL Kothari. “Comparison of in vitro regeneration efficiency of leaf explants in response to different cytokinins and assessment of genetic uniformity of regenerated plants of Solanum surattence Burm.f.” Intern. J. Biotechnol. 1,4 (2010): 097-103.

Sinha A, Jain R, Kachhwaha S and Kothari SL. “Optimization of the level of micronutrient copper in the culture medium improves shoot bud regeneration in Indian Ginseng [Withania somnifera (L.) Dunal].” Natl. Acad. Sci. Lett. (India). 33 (2010):11-16.

Subramanian J, and Gopala Krishna, J. “A comparative analysis of genetic diversity in blackgram genotype using RAPD and ISSR markers”. TheorAppl Genet, 109 (2004):1687-1693.

Smita J, B Jugale, Leela, Bhosale, D. Trupti, Kad and AB Nadal. “Genetic diversity assessment in intra an inter populations of Xylocarpus granatum Koen. A critically endangered and narrowly distributed species of Maharastra.” Curr. Sci., 97, 5 (2009): 695-700.

Thomas JB, D Vijayan, SD Joshi, SJ Lopez and RR Kumar. “Genetic integrity of somaclonal variants in tea (Camellia sinensis (L.) O Kuntze as revealed by inter simple sequence repeats.” J. Biotechnol., 123(2006):149-154.

Tyagi P, S Khanduja and SL Kothari. “In vitro culture of Capparis decidua and assessment of clonal fidelity of the regenerated plants.” Biologia Plantarum., 54 (2010): 126-130.

Vigya Kesari, Vinod Madurai Sathyanarayana, Ajay Parida and LathaRangan. “Molecular marker-based characterization in candidate plus trees of Pongamia pinnata, a potential biodiesel legume.” AoB plants (2010): plq017, doi:10.1093/aobpla/plq017

Warrier PK, VPK. Nambiar, and C. Raman Kutty. In: Indian Medicinal Plants, Orient Longman Publishers Ltd, Madras. Vol.I. (1994): 366.

Chandra Kala S, Mallikarjuna K and Aruna P. “Qualitative Phytochemical Analysis of Seed and Leaf Callus Extracts of Canthium parviflorum Lam.” Guntur District, Andhra Pradesh. Int. J. Pharm. Bio. Sci. 3,4 (2012): 177-182.

Yuan XF, ZH Dai, XD Wang, B Zhao. “Assessment of genetic stability in tissue-cultured products and seedlings of Saussurea involucrata by RAPD and ISSR markers.” Biotechnol. Lett. 31(2009): 1279-1287.




DOI: https://doi.org/10.21746/aps.2017.6.11.10



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